Publications by the Interdisciplinary Informatics Department faculty members are collected here.

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Submissions from 2016

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Robustness of Multiple Indicators in Automated Screening Systems for Deception Detection, Nathan Twyman, Jeffrey Gainer Proudfoot, Ryan M. Schuetzler, Aaron Elkins, and Douglas C. Derrick

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Transcriptomic comparison of invasive bigheaded carps (Hypophthalmichthys nobilis and Hypophthalmichthys molitrix) and their hybrids, Jun Wang, James T. Lamer, Sarah Gaughan, Michael Wachholtz, Chenghui Wang, and Guoquing Lu

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Is Social Media a Threat or Can It Be a Trusted Agent?, William Ward, Katherine Cole-Miller, Ann Fruhling, and Kathryn M. Cooper

Submissions from 2015

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How do politicians use Facebook? An applied Social Observatory, Simon Caton, Margeret A. Hall, and Christof Weinhardt

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Detecting Well-being in Digital Communities: An Interdisciplinary Engineering Approach for its Indicators, Margeret A. Hall

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Genome-Wide Detection and Analysis of Multifunctional Genes, Yuri Pritykin, Dario Ghersi, and Mona Singh

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Coexpression Network Analysis of miRNA-142 Overexpression in Neuronal Cells, Ishwor Thapa, Howard S. Fox, and Dhundy Raj Bastola

Submissions from 2014

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Identifying aging-related genes in mouse hippocampus using gateway nodes, Kathryn Dempsey Cooper and Hesham Ali

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molBLOCKS: Decomposing small molecule sets and uncovering enriched fragments, Dario Ghersi and Mona Singh

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The Impact of Example Modality and Physical Interactions on Design Creativity, Christine A. Toh and Scarlett R. Miller

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The Impact of Team-Based Product Dissection on Design Novelty, Christine A. Toh, Scarlett R. Miller, and Gül E. Okudan Kremer

Submissions from 2013

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A Parallel Template for Implementing Filters for Biological Correlation Networks, Kathryn Dempsey Cooper, Vladimir Ufimtsev, Sanjukta Bhowmick, and Hesham Ali

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Disentangling function from topology to infer the network properties of disease genes, Dario Ghersi and Mona Singh

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Interaction-based discovery of functionally important genes in cancers, Dario Ghersi and Mona Singh

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The Role of Personality and Team-Based Product Dissection on Fixation Effects, Christine A. Toh, Scarlett R. Miller, and Gül E. Okudan Kremer

Submissions from 2012

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Function-­preserving filters for sampling in biological networks, Kathryn Dempsey Cooper, Sanjukta Bhowmick, and Hesham Ali

Design Principles for Special Purpose, Embodied, Conversational Intelligence with Environmental Sensors (SPECIES) Agents, Douglas Derrick; Jeffrey Jenkins; and Jay F. Nunamaker, Jr.

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Automated identification of binding sites forphosphorylated ligands in protein structures, Dario Ghersi and Roberto Sanchez

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CD4+ Regulatory and Effector/Memory T Cell Subsets Profile Motor Dysfunction in Parkinson’s Disease, Jessica A. Hutter Saunders, Katherine A. Estes, Lisa M. Kosloski, Heather E. Allen, Kathryn Dempsey Cooper, Diego R. Torres-Russotto, Jane L. Meza, Pamela M. Santamaria, John M. Bertoni, Daniel L. Murman, Hesham Ali, David G. Standaert, R. Lee Mosley, and Howard E. Gendelman

Submissions from 2011

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Computer simulations of heterologous immunity: Highlights of an interdisciplinary cooperation, Claudia Calcagno, Roberto Puzone, Yanthe E. Pearson, Yiming Cheng, Dario Ghersi, Liisa K. Selin, Raymond M. Welsh, and Franco Celada

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Systematic assessment of accuracy of comparative model of proteins belonging to different structural fold classes, Subrata Chakrabarty, Dario Ghersi, and Roberto Sanchez

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A Parallel Graph Sampling Algorithm for Analyzing Gene Correlation Networks, Kathryn Dempsey Cooper, Kanimathi Duraisamy, Hesham Ali, and Sanjukta Bhowmick

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An Evaluation of the Usability of a Computerized Decision Support System for Nursing Homes, M. Fossum, M. Ehnfors, Ann L. Fruhling, and A. Ehrenberg

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Beyond structural genomics: computational approaches for the identification of ligand binding sites in protein structures, Dario Ghersi and Roberto Sanchez

Submissions from 2010

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Biochemical Profiling of Histone Binding Selectivity of the Yeast Bromodomain Family, Qiang Zhang, Suvobrata Chakravarty, Dario Ghersi, Lei Zeng, Alexander N. Plotnikov, Roberto Sanchez, and Ming-Ming Zhou

Submissions from 2009

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A discrete computer model of the immune system reveals competitive interactions between the humoral and cellular branch and between cross-reacting memory and naïve responses, Yiming Cheng, Dario Ghersi, Claudia Calcagno, Liisa K. Selin, Roberto Puzone, and Franco Celada

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EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures, Dario Ghersi and Roberto Sanchez

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Improving accuracy and efficiency of blind protein-ligand docking by focusing on predicted binding sites, Dario Ghersi and Roberto Sanchez

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SITEHOUND-web: a server for ligand binding site identification in protein structures, Marylens Hernandez, Dario Ghersi, and Roberto Sanchez

Submissions from 2008

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Collecting Open Source Intelligence via Tailored Information Delivery Systems, William Sousan, Qiuming Zhu, Ryan Nickell, William Mahoney, and Peter Hospodka

Submissions from 2006

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IFN-Induced Attrition of CD8 T Cells in the Presence or Absence of Cognate Antigen during the Early Stages of Viral Infections, Kapil Bahl, Sung-Kwon Kim, Claudia Calcagno, Dario Ghersi, Roberto Puzone, Franco Celada, Liisa K. Selin, and Raymond M. Welsh

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Narrowed TCR repertoire and viral escape as a consequence of heterologous immunity, Markus Cornberg, Alex T. Chen, Lee A. Wilkinson, Michael A. Brehm, Sung-Kwon Kim, Claudia Calcagno, Dario Ghersi, Roberto Puzone, Franco Celada, Raymond M. Welsh, and Liisa K. Selin

Submissions from 2004

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Nebraska Lewis & Clark Bicentennial Commission: The Final Report to the Governor, Members of the Nebraska Legislature, and the People of Nebraska, Robert Pawloski

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CD8 memory T cells: cross-reactivity and heterologous immunity, Liisa K. Selin, Markus Cornberg, Michael A. Brehm, Sung-Kwon Kim, Claudia Calcagno, Dario Ghersi, Roberto Puzone, Franco Celada, and Raymond M. Welsh

Submissions from 2000

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The Impact of Electronic Commerce on Business-Level Strategies, Ann L. Fruhling and Lester A. Digman